MRIQC#
Author: Monika Doerig
Citation:
MRIQC:
Esteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ; MRIQC: Advancing the Automatic Prediction of Image Quality in MRI from Unseen Sites; PLOS ONE 12(9):e0184661; doi:10.1371/journal.pone.0184661
The documentation of this project is found here.
Data from OpenNeuro: Flanker Dataset
Kelly AMC and Uddin LQ and Biswal BB and Castellanos FX and Milham MP (2018). Flanker task (event-related). OpenNeuro Dataset ds000102. [Dataset] doi: null
Kelly AM, Uddin LQ, Biswal BB, Castellanos FX, Milham MP. Competition between functional brain networks mediates behavioral variability. Neuroimage. 2008 Jan 1;39(1):527-37. doi: 10.1016/j.neuroimage.2007.08.008. Epub 2007 Aug 23. PMID: 17919929.
Mennes, M., Kelly, C., Zuo, X.N., Di Martino, A., Biswal, B.B., Castellanos, F.X., Milham, M.P. (2010). Inter-individual differences in resting-state functional connectivity predict task-induced BOLD activity. Neuroimage, 50(4):1690-701. doi: 10.1016/j.neuroimage.2010.01.002. Epub 2010 Jan 15. Erratum in: Neuroimage. 2011 Mar 1;55(1):434
Mennes, M., Zuo, X.N., Kelly, C., Di Martino, A., Zang, Y.F., Biswal, B., Castellanos, F.X., Milham, M.P. (2011). Linking inter-individual differences in neural activation and behavior to intrinsic brain dynamics. Neuroimage, 54(4):2950-9. doi: 10.1016/j.neuroimage.2010.10.046
Setup Neurodesk#
%%capture
import os
import sys
IN_COLAB = 'google.colab' in sys.modules
if IN_COLAB:
os.environ["LD_PRELOAD"] = "";
os.environ["APPTAINER_BINDPATH"] = "/content,/tmp,/cvmfs"
os.environ["MPLCONFIGDIR"] = "/content/matplotlib-mpldir"
os.environ["LMOD_CMD"] = "/usr/share/lmod/lmod/libexec/lmod"
!curl -J -O https://raw.githubusercontent.com/NeuroDesk/neurocommand/main/googlecolab_setup.sh
!chmod +x googlecolab_setup.sh
!./googlecolab_setup.sh
os.environ["MODULEPATH"] = ':'.join(map(str, list(map(lambda x: os.path.join(os.path.abspath('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/'), x),os.listdir('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/')))))
# Output CPU information:
!cat /proc/cpuinfo | grep 'vendor' | uniq
!cat /proc/cpuinfo | grep 'model name' | uniq
vendor_id : GenuineIntel
model name : Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz
Load MRIQC#
import lmod
await lmod.purge()
await lmod.load('mriqc/22.0.6')
await lmod.list()
['mriqc/22.0.6']
!mriqc -help
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
usage: mriqc [-h] [--version] [-v] [--species {human,rat}]
[--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]]
[--session-id [SESSION_ID ...]] [--run-id [RUN_ID ...]]
[--task-id [TASK_ID ...]] [-m [MODALITIES ...]] [--dsname DSNAME]
[--bids-database-dir PATH] [--nprocs NPROCS]
[--omp-nthreads OMP_NTHREADS] [--mem MEMORY_GB] [--testing] [-f]
[--pdb] [-w WORK_DIR] [--verbose-reports] [--write-graph]
[--dry-run] [--resource-monitor] [--use-plugin USE_PLUGIN]
[--no-sub] [--email EMAIL] [--webapi-url WEBAPI_URL]
[--webapi-port WEBAPI_PORT] [--upload-strict] [--ants-float]
[--ants-settings ANTS_SETTINGS] [--ica] [--fft-spikes-detector]
[--fd_thres FD_THRES] [--deoblique] [--despike]
[--start-idx START_IDX] [--stop-idx STOP_IDX]
bids_dir output_dir {participant,group} [{participant,group} ...]
mriqc: error: argument -h/--help: ignored explicit argument 'elp'
Data preparation#
!datalad install https://github.com/OpenNeuroDatasets/ds000102.git
!cd ds000102 && datalad get sub-01 sub-02 sub-03
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[INFO ] scanning for unlocked files (this may take some time)
[INFO ] Remote origin not usable by git-annex; setting annex-ignore
[INFO ] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
| datalad siblings -d "/home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102" enable -s s3-PRIVATE
install(ok): /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102 (dataset)
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get(ok): sub-01/anat/sub-01_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/anat/sub-02_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/anat/sub-03_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01 (directory)
get(ok): sub-02 (directory)
get(ok): sub-03 (directory)
action summary:
get (ok: 12)
Running MRIQC#
The following section outlines key MRIQC command-line options used in this analysis. These include required positional arguments for specifying input and output directories, as well as optional flags for performance optimization and report generation. For a complete list of available options, refer to the official documentation.
Positional Arguments#
bids_dir: The root folder of a BIDS valid dataset (sub-XXXXX folders should be found at the top level in this folder).output_dir: The directory where the output files should be stored. If you are running group level analysis this folder should be prepopulated with the results of the participant level analysis.analysis_level: Possible choices: participant, group
Level of the analysis that will be performed. Multiple participant level analyses can be run independently (in parallel) using the same output_dir.
-v, --verbose: Increases log verbosity for each occurrence, debug level is -vvv.
Options to handle performance#
--nprocs, --n_procs, --n_cpus, -n-cpusMaximum number of simultaneously running parallel processes executed by MRIQC (e.g., several instances of ANTs’ registration). However, when –nprocs is greater or equal to the –omp-nthreads option, it also sets the maximum number of threads that simultaneously running processes may aggregate (meaning, with –nprocs 16 –omp-nthreads 8 a maximum of two 8-CPU-threaded processes will be running at a given time). Under this mode of operation, –nprocs sets the maximum number of processors that can be assigned work within an MRIQC job, which includes all the processors used by currently running single- and multi-threaded processes. If None, the number of CPUs available will be automatically assigned (which may not be what you want in, e.g., shared systems like a HPC cluster.--mem, --mem_gb, --mem-gb: Upper bound memory limit for MRIQC processes.
Instrumental options#
-w, --work-dir: Path where intermediate results should be stored.--verbose-reports: Generate verbose HTML reports with additional details--no-sub: Turn off submission of anonymized quality metrics to MRIQC’s metrics repository.
!
Warning:
--no-sub and --notrack may be necessary in environments with restricted internet access, where submission attempts may trigger runtime errors.
Participant-level Analysis#
%%bash
# Set the number of threads for ITK (Image Processing Toolkit) to use
export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=6
# Set the directory for matplotlib configuration to avoid conflicts
export MPLCONFIGDIR=~/matplotlib-mpldir
# Run MRIQC
mriqc ds000102 \
MRIQC \
participant \
--participant-label sub-01 sub-02 sub-03 \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10000 \
--verbose-reports \
-v
250507-00:29:13,310 cli IMPORTANT:
Running MRIQC version 22.0.6:
* BIDS dataset path: /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102.
* Output folder: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC.
* Analysis levels: ['participant'].
250507-00:29:13,541 nipype.workflow INFO:
Building functional MRIQC workflow for files: /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz.
250507-00:29:15,471 nipype.workflow INFO:
Building anatomical MRIQC workflow for 3 NIfTI files..
250507-00:29:29,757 nipype.workflow INFO:
Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
250507-00:29:30,35 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datalad_get".
250507-00:29:30,36 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datalad_get".
250507-00:29:30,39 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250507-00:29:30,39 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250507-00:29:30,55 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/provenance".
250507-00:29:30,63 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datalad_get".
250507-00:29:30,66 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250507-00:29:30,66 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:29:30,184 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.098107s.
250507-00:29:30,437 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/metadata".
250507-00:29:30,441 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250507-00:29:30,443 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:30,443 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:29:30,584 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 0.50732s.
250507-00:29:30,584 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 0.509127s.
250507-00:29:30,584 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 0.499412s.
250507-00:29:30,739 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.293802s.
250507-00:29:31,389 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.944549s.
250507-00:29:31,692 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/provenance".
250507-00:29:31,694 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:29:31,764 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.068969s.
250507-00:29:31,889 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/metadata".
250507-00:29:31,890 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250507-00:29:31,891 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:31,892 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:29:32,282 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.388612s.
250507-00:29:32,693 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.800881s.
250507-00:29:32,823 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/provenance".
250507-00:29:32,824 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:29:32,886 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.060691s.
250507-00:29:33,127 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/metadata".
250507-00:29:33,127 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250507-00:29:33,129 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:33,129 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:29:33,441 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.311381s.
250507-00:29:33,903 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.773204s.
250507-00:29:34,30 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/provenance".
250507-00:29:34,32 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:29:34,99 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.065997s.
250507-00:29:34,225 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/metadata".
250507-00:29:34,226 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250507-00:29:34,227 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:34,228 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:29:34,529 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.300827s.
250507-00:29:34,990 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.761779s.
250507-00:29:35,117 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/provenance".
250507-00:29:35,119 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:29:35,178 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.058715s.
250507-00:29:35,306 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/metadata".
250507-00:29:35,307 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250507-00:29:35,308 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:35,309 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:29:35,594 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.284186s.
250507-00:29:36,93 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.784624s.
250507-00:29:36,223 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/provenance".
250507-00:29:36,224 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:29:36,285 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.059261s.
250507-00:29:36,410 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/metadata".
250507-00:29:36,412 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250507-00:29:36,412 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:36,413 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:29:36,710 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.294817s.
250507-00:29:37,187 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.774323s.
250507-00:29:37,330 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/conform".
250507-00:29:37,331 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/metadata".
250507-00:29:37,332 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250507-00:29:37,333 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:37,469 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/conform".
250507-00:29:37,470 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/metadata".
250507-00:29:37,471 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250507-00:29:37,480 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:37,491 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/conform".
250507-00:29:37,497 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250507-00:29:37,508 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/metadata".
250507-00:29:37,514 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:29:38,226 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 0.892213s.
250507-00:29:38,297 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.962961s.
250507-00:29:38,378 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 0.905845s.
250507-00:29:38,399 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 0.899501s.
250507-00:29:38,505 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.024393s.
250507-00:29:38,572 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.056238s.
250507-00:29:39,697 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/sanitize".
250507-00:29:39,697 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/sanitize".
250507-00:29:39,698 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/sanitize".
250507-00:29:39,699 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/sanitize".
250507-00:29:39,699 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:29:39,699 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:29:39,699 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/sanitize".
250507-00:29:39,700 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/sanitize".
250507-00:29:39,700 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:29:39,701 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:29:39,709 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:29:39,709 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:29:39,757 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.054872s.
250507-00:29:39,813 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.112818s.
250507-00:29:41,476 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_clip".
250507-00:29:41,476 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/RotationMask".
250507-00:29:41,479 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250507-00:29:41,479 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250507-00:29:42,305 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.601501s.
250507-00:29:42,383 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.681432s.
250507-00:29:42,467 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.756982s.
250507-00:29:42,480 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.769913s.
250507-00:29:43,489 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicNoise".
250507-00:29:43,490 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/RotationMask".
250507-00:29:43,490 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_clip".
250507-00:29:43,490 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicNoise".
250507-00:29:43,492 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:29:43,492 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250507-00:29:43,492 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250507-00:29:43,492 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:29:44,758 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 3.278387s.
250507-00:29:45,486 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_clip".
250507-00:29:45,498 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250507-00:29:47,222 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 3.728626s.
250507-00:29:47,499 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/RotationMask".
250507-00:29:47,502 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250507-00:29:48,776 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 1.272915s.
250507-00:29:49,490 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicNoise".
250507-00:29:49,492 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:30:02,354 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 18.861585s.
250507-00:30:02,698 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 19.204571s.
250507-00:30:03,505 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/motion_correct".
250507-00:30:03,506 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesMask".
250507-00:30:03,508 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:30:03,508 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:30:04,174 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 22.694523s.
250507-00:30:05,550 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/motion_correct".
250507-00:30:05,553 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:30:06,398 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 22.905134s.
250507-00:30:06,714 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 17.22095s.
250507-00:30:07,522 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesMask".
250507-00:30:07,523 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/motion_correct".
250507-00:30:07,525 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:30:07,526 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:30:08,64 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 22.565182s.
250507-00:30:08,568 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 5.058244s.
250507-00:30:09,503 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/motion_correct".
250507-00:30:09,509 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesMask".
250507-00:30:09,511 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:30:09,513 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:30:09,984 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 2.457695s.
250507-00:30:11,502 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesMask".
250507-00:30:11,505 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:30:11,965 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 2.451437s.
250507-00:30:13,505 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/motion_correct".
250507-00:30:13,508 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:30:13,575 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 2.069481s.
250507-00:30:15,510 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesMask".
250507-00:30:15,513 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:30:17,487 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 1.9726050000000002s.
250507-00:30:19,510 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/motion_correct".
250507-00:30:19,514 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:32:01,225 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 113.697607s.
250507-00:32:01,744 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesMask".
250507-00:32:01,747 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:32:01,921 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 118.411411s.
250507-00:32:03,679 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_n4".
250507-00:32:03,694 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:32:07,155 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 5.407108s.
250507-00:32:07,727 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 122.172033s.
250507-00:32:07,734 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_n4".
250507-00:32:07,737 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:32:09,673 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_n4".
250507-00:32:09,687 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:32:11,812 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 122.300337s.
250507-00:32:13,814 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeFD".
250507-00:32:13,847 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:32:13,871 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.022988s.
250507-00:32:14,157 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 120.647062s.
250507-00:32:15,679 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/mean".
250507-00:32:15,680 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250507-00:32:15,724 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:32:15,724 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:32:17,125 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.399241s.
250507-00:32:17,685 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/quality".
250507-00:32:17,696 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.969676s.
250507-00:32:17,696 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:32:19,686 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250507-00:32:19,726 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:32:20,175 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.478127s.
250507-00:32:20,931 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.203939s.
250507-00:32:21,235 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 121.719324s.
250507-00:32:21,661 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeFD".
250507-00:32:21,662 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/mean".
250507-00:32:21,663 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250507-00:32:21,683 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:32:21,684 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:32:21,684 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:32:21,715 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.024362s.
250507-00:32:22,859 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.173987s.
250507-00:32:23,214 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.5294560000000001s.
250507-00:32:23,661 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/quality".
250507-00:32:23,662 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250507-00:32:23,667 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeFD".
250507-00:32:23,673 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:32:23,673 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:32:23,681 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.007525s.
250507-00:32:23,683 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:32:24,594 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.920537s.
250507-00:32:25,366 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.680225s.
250507-00:32:25,662 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/mean".
250507-00:32:25,664 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250507-00:32:25,665 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:32:25,665 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/quality".
250507-00:32:25,666 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:32:25,672 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:32:26,540 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.872718s.
250507-00:32:26,954 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.287219s.
250507-00:32:27,261 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.587307s.
250507-00:32:27,660 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250507-00:32:27,661 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeFD".
250507-00:32:27,662 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/mean".
250507-00:32:27,664 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:32:27,664 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:32:27,665 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:32:27,668 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.003301s.
250507-00:32:28,633 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.968369s.
250507-00:32:28,900 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.234434s.
250507-00:32:29,662 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250507-00:32:29,663 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/quality".
250507-00:32:29,663 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250507-00:32:29,665 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:32:29,666 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:32:29,668 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:32:30,649 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.983052s.
250507-00:32:30,700 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.031401s.
250507-00:32:31,622 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.954059s.
250507-00:32:31,664 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeFD".
250507-00:32:31,665 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/mean".
250507-00:32:31,673 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:32:31,674 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:32:31,678 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.003645s.
250507-00:32:32,742 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.066937s.
250507-00:32:33,677 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250507-00:32:33,677 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/quality".
250507-00:32:33,678 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250507-00:32:33,679 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:32:33,681 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:32:33,690 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:32:34,814 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.132111s.
250507-00:32:34,994 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.29595s.
250507-00:32:35,678 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeFD".
250507-00:32:35,678 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/mean".
250507-00:32:35,680 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:32:35,681 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:32:35,685 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.003414s.
250507-00:32:35,901 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.220772s.
250507-00:32:36,75 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 31.80689s.
250507-00:32:36,511 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 0.829288s.
250507-00:32:37,675 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250507-00:32:37,675 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/quality".
250507-00:32:37,676 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250507-00:32:37,677 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/synthstrip".
250507-00:32:37,678 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:32:37,679 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:32:37,679 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250507-00:32:37,683 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:32:38,586 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.900898s.
250507-00:32:38,588 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.907435s.
250507-00:32:38,757 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 30.478492s.
250507-00:32:39,509 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.829619s.
250507-00:32:39,689 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/synthstrip".
250507-00:32:39,697 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/afni_msk".
250507-00:32:39,701 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250507-00:32:39,701 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250507-00:32:39,701 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250507-00:32:39,711 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:32:39,711 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:32:39,712 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:32:40,417 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.70523s.
250507-00:32:41,29 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 31.067281s.
250507-00:32:41,207 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.493876s.
250507-00:32:41,703 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/synthstrip".
250507-00:32:41,703 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250507-00:32:41,704 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250507-00:32:41,710 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250507-00:32:41,711 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:32:41,712 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:32:45,499 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 5.785976s.
250507-00:32:45,695 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/afni_msk".
250507-00:32:45,712 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:32:46,754 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.041253s.
250507-00:32:47,653 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.9409089999999996s.
250507-00:32:47,728 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250507-00:32:47,740 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:32:48,458 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.745544s.
250507-00:32:49,754 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250507-00:32:49,755 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250507-00:32:49,764 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:32:49,765 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:32:50,289 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.674613s.
250507-00:32:51,708 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250507-00:32:51,722 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:32:55,317 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 5.55153s.
250507-00:32:55,729 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/afni_msk".
250507-00:32:55,732 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:32:55,999 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.230973s.
250507-00:32:56,303 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.570336s.
250507-00:32:57,309 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.586282s.
250507-00:32:57,723 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250507-00:32:57,724 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250507-00:32:57,724 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250507-00:32:57,726 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:32:57,726 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:32:57,727 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:32:59,310 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.583161s.
250507-00:32:59,736 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250507-00:32:59,740 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:04,89 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.361429s.
250507-00:33:05,604 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 7.876353s.
250507-00:33:05,740 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/afni_msk".
250507-00:33:05,747 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:33:06,579 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.83045s.
250507-00:33:07,738 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250507-00:33:07,739 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250507-00:33:07,746 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:07,752 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:33:07,905 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 8.164429s.
250507-00:33:09,751 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250507-00:33:09,767 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:09,878 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.124898s.
250507-00:33:11,752 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250507-00:33:11,764 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:16,329 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 8.581358999999999s.
250507-00:33:17,734 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/afni_msk".
250507-00:33:17,744 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:33:18,530 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.785181s.
250507-00:33:18,603 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 8.835213s.
250507-00:33:19,727 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250507-00:33:19,728 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250507-00:33:19,736 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:33:19,740 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:20,284 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 8.518642s.
250507-00:33:21,352 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.614833s.
250507-00:33:21,740 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250507-00:33:21,741 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250507-00:33:21,748 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:21,750 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:26,719 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.9785509999999995s.
250507-00:33:27,744 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/afni_msk".
250507-00:33:27,746 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:33:28,498 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 6.749173s.
250507-00:33:28,773 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.025161s.
250507-00:33:28,804 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 7.052574s.
250507-00:33:29,761 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250507-00:33:29,761 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250507-00:33:29,762 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250507-00:33:29,763 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:33:29,764 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:29,765 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:31,447 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.682528s.
250507-00:33:31,776 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250507-00:33:31,779 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:34,498 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 4.732437s.
250507-00:33:35,361 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 5.595099s.
250507-00:33:35,783 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250507-00:33:35,784 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/smoothness".
250507-00:33:35,786 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:33:35,787 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:33:36,476 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 4.696027s.
250507-00:33:37,559 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.770165s.
250507-00:33:37,753 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/outliers".
250507-00:33:37,754 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/gcor".
250507-00:33:37,757 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:33:37,758 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:33:39,238 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.4796420000000001s.
250507-00:33:39,744 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dilated_mask".
250507-00:33:39,747 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:33:39,773 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.025313s.
250507-00:33:40,206 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 2.447227s.
250507-00:33:41,747 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250507-00:33:41,748 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250507-00:33:41,750 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:33:41,751 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:33:42,103 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 6.315503s.
250507-00:33:43,765 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250507-00:33:43,778 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:33:47,75 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 5.322451s.
250507-00:33:47,816 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250507-00:33:47,832 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:33:48,584 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 6.832186s.
250507-00:33:49,818 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/smoothness".
250507-00:33:49,832 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:33:51,622 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.788665s.
250507-00:33:53,834 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/outliers".
250507-00:33:53,838 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:33:57,102 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 3.262752s.
250507-00:33:57,818 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/gcor".
250507-00:33:57,829 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:33:59,518 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 11.685285s.
250507-00:33:59,788 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dilated_mask".
250507-00:33:59,791 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:33:59,885 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.092568s.
250507-00:34:01,96 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.266031s.
250507-00:34:01,772 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250507-00:34:01,773 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250507-00:34:01,776 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:34:01,776 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:34:08,424 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 6.646942s.
250507-00:34:09,727 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 7.951028s.
250507-00:34:09,829 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250507-00:34:09,837 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:34:11,826 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250507-00:34:11,846 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:34:20,163 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 8.315063s.
250507-00:34:21,838 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/smoothness".
250507-00:34:21,842 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:34:23,588 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.745593s.
250507-00:34:23,836 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/outliers".
250507-00:34:23,840 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:34:25,724 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.883076s.
250507-00:34:27,831 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/gcor".
250507-00:34:27,835 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:34:30,607 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 2.77105s.
250507-00:34:31,900 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dilated_mask".
250507-00:34:31,917 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:34:31,963 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.044755s.
250507-00:34:33,835 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250507-00:34:33,842 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:34:39,852 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 122.171511s.
250507-00:34:41,35 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 7.188256s.
250507-00:34:41,134 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 119.422929s.
250507-00:34:41,663 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 121.960562s.
250507-00:34:41,820 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/post_n4".
250507-00:34:41,823 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/smoothness".
250507-00:34:41,823 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicZoomed".
250507-00:34:41,824 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:34:41,826 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:34:41,826 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:34:43,815 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotBrainmask".
250507-00:34:43,818 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:34:48,856 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 5.036539s.
250507-00:34:49,478 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 7.650815s.
250507-00:34:49,826 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/post_n4".
250507-00:34:49,827 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/smoothness".
250507-00:34:49,829 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:34:49,830 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:34:54,792 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 12.964726s.
250507-00:34:55,299 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 13.22975s.
250507-00:34:55,830 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicZoomed".
250507-00:34:55,832 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotBrainmask".
250507-00:34:55,834 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:34:55,838 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:34:57,184 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 7.352542s.
250507-00:34:57,843 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/post_n4".
250507-00:34:57,848 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:35:00,458 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 4.618836s.
250507-00:35:00,538 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 76.758387s.
250507-00:35:01,844 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/smoothness".
250507-00:35:01,845 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicZoomed".
250507-00:35:01,848 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:35:01,848 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:35:02,873 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 12.771073s.
250507-00:35:03,840 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotBrainmask".
250507-00:35:03,843 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:35:08,557 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 6.708607s.
250507-00:35:08,558 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 4.713988s.
250507-00:35:09,868 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250507-00:35:09,870 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250507-00:35:09,871 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:35:09,882 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:35:11,127 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 15.291425s.
250507-00:35:11,713 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 13.863776s.
250507-00:35:11,877 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250507-00:35:11,880 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:35:13,872 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/smoothness".
250507-00:35:13,876 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:35:14,241 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.368858s.
250507-00:35:15,447 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.569725s.
250507-00:35:15,864 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/outliers".
250507-00:35:15,865 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/gcor".
250507-00:35:15,868 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:35:15,871 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:35:16,457 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 14.607543s.
250507-00:35:16,963 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.093796s.
250507-00:35:17,554 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 5.672594s.
250507-00:35:17,856 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dilated_mask".
250507-00:35:17,857 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250507-00:35:17,857 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250507-00:35:17,859 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:35:17,860 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:35:17,861 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:35:17,958 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.097907s.
250507-00:35:18,144 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 68.304712s.
250507-00:35:18,407 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 2.534641s.
250507-00:35:19,856 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250507-00:35:19,856 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250507-00:35:19,857 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/smoothness".
250507-00:35:19,859 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:35:19,860 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:35:19,860 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:35:19,981 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 2.119115s.
250507-00:35:21,350 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.489029s.
250507-00:35:21,871 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/outliers".
250507-00:35:21,871 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/gcor".
250507-00:35:21,875 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:35:21,876 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:35:22,114 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.251315s.
250507-00:35:22,971 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.095148s.
250507-00:35:23,874 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dilated_mask".
250507-00:35:23,875 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250507-00:35:23,878 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:35:23,880 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:35:23,972 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.089528s.
250507-00:35:24,399 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 2.5210150000000002s.
250507-00:35:25,821 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 5.959475s.
250507-00:35:25,862 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250507-00:35:25,864 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250507-00:35:25,865 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:35:25,872 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:35:26,16 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 2.136435s.
250507-00:35:27,876 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250507-00:35:27,876 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/smoothness".
250507-00:35:27,879 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:35:27,881 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:35:28,765 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 0.881808s.
250507-00:35:29,907 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/outliers".
250507-00:35:29,912 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:35:30,292 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.425865s.
250507-00:35:31,34 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.121159s.
250507-00:35:31,887 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/gcor".
250507-00:35:31,887 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dilated_mask".
250507-00:35:31,891 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:35:31,891 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:35:31,919 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.026463s.
250507-00:35:33,834 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 5.953224s.
250507-00:35:33,892 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250507-00:35:33,896 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:35:34,673 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 2.781058s.
250507-00:35:35,881 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250507-00:35:35,882 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250507-00:35:35,884 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:35:35,886 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:35:36,54 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 2.156128s.
250507-00:35:37,888 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_inu".
250507-00:35:37,899 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250507-00:35:39,80 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.177997s.
250507-00:35:39,888 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_masked".
250507-00:35:39,892 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250507-00:35:40,248 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.362721s.
250507-00:35:40,653 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.760288s.
250507-00:35:41,890 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/SpatialNormalization".
250507-00:35:41,890 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/fsl_bet".
250507-00:35:41,894 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250507-00:35:41,894 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:36:02,567 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 52.68368s.
250507-00:36:03,955 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_inu".
250507-00:36:03,960 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250507-00:36:05,153 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.18996s.
250507-00:36:05,925 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_masked".
250507-00:36:05,928 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250507-00:36:06,623 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.694133s.
250507-00:36:07,941 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/SpatialNormalization".
250507-00:36:07,946 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:36:40,737 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 80.876445s.
250507-00:36:41,968 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/fsl_bet".
250507-00:36:41,972 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250507-00:36:43,165 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 77.289616s.
250507-00:36:43,940 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_inu".
250507-00:36:43,944 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250507-00:36:45,70 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.124519s.
250507-00:36:45,946 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_masked".
250507-00:36:45,950 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250507-00:36:46,633 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.682407s.
250507-00:36:47,948 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/SpatialNormalization".
250507-00:36:47,953 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:36:48,988 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 67.092476s.
250507-00:36:49,979 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/fsl_bet".
250507-00:36:49,983 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250507-00:36:55,132 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 47.183863s.
250507-00:36:55,977 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/measures".
250507-00:36:55,985 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:36:56,531 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.54432s.
250507-00:36:57,986 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/subtract_mask".
250507-00:36:57,989 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:36:58,6 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.015874s.
250507-00:36:59,170 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 83.282952s.
250507-00:36:59,968 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250507-00:36:59,969 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/measures".
250507-00:36:59,972 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:36:59,977 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:37:00,547 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.568998s.
250507-00:37:00,674 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 0.701375s.
250507-00:37:01,976 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/subtract_mask".
250507-00:37:01,978 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250507-00:37:01,980 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:37:01,987 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:37:02,1 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.019892s.
250507-00:37:02,30 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 80.135133s.
250507-00:37:02,660 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 0.670714s.
250507-00:37:03,969 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/measures".
250507-00:37:03,970 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/subtract_mask".
250507-00:37:03,971 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250507-00:37:03,979 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:37:03,980 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:37:03,987 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:37:04,5 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.024354s.
250507-00:37:04,540 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.551568s.
250507-00:37:04,633 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 0.652294s.
250507-00:37:05,991 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/measures".
250507-00:37:05,991 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/subtract_mask".
250507-00:37:05,992 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250507-00:37:05,994 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:37:05,997 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:37:06,0 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:37:06,10 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.015647s.
250507-00:37:06,620 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.619136s.
250507-00:37:06,642 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 0.643824s.
250507-00:37:07,982 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/measures".
250507-00:37:07,982 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/subtract_mask".
250507-00:37:07,984 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250507-00:37:07,985 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:37:07,987 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:37:08,1 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:37:08,2 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.016114s.
250507-00:37:08,588 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.583484s.
250507-00:37:08,594 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 0.605725s.
250507-00:37:10,11 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/measures".
250507-00:37:10,11 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/subtract_mask".
250507-00:37:10,19 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250507-00:37:10,21 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:37:10,24 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:37:10,24 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:37:10,38 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.016297s.
250507-00:37:10,561 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.536147s.
250507-00:37:10,630 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 0.604623s.
250507-00:37:11,977 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/segmentation".
250507-00:37:11,978 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/invert_xfm".
250507-00:37:11,978 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotHeadmask".
250507-00:37:11,981 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250507-00:37:11,983 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250507-00:37:11,983 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:37:16,939 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 4.954241s.
250507-00:37:17,980 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/segmentation".
250507-00:37:17,984 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250507-00:37:30,210 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 18.225733s.
250507-00:37:32,5 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/invert_xfm".
250507-00:37:32,9 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:37:49,691 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 17.680784s.
250507-00:37:50,10 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/segmentation".
250507-00:37:50,16 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250507-00:37:51,640 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 69.666329s.
250507-00:37:52,9 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotHeadmask".
250507-00:37:52,13 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250507-00:37:57,448 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 69.487173s.
250507-00:37:58,13 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/invert_xfm".
250507-00:37:58,18 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:38:04,434 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 12.420239s.
250507-00:38:06,20 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/datasink".
250507-00:38:06,34 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:38:06,37 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001166s.
250507-00:38:06,187 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/parcels".
250507-00:38:06,191 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-00:38:06,214 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.021876s.
250507-00:38:08,13 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/datasink".
250507-00:38:08,23 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:38:08,24 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.00068s.
250507-00:38:08,162 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 78.176592s.
250507-00:38:08,166 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/parcels".
250507-00:38:08,169 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-00:38:08,190 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.02029s.
250507-00:38:10,19 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/datasink".
250507-00:38:10,20 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotHeadmask".
250507-00:38:10,24 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250507-00:38:10,28 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:38:10,30 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000835s.
250507-00:38:10,178 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/parcels".
250507-00:38:10,181 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-00:38:10,201 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.019974s.
250507-00:38:12,31 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/datasink".
250507-00:38:12,40 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:38:12,42 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000786s.
250507-00:38:12,197 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/parcels".
250507-00:38:12,200 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-00:38:12,222 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.02049s.
250507-00:38:14,20 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/datasink".
250507-00:38:14,29 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:38:14,31 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000788s.
250507-00:38:14,183 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/parcels".
250507-00:38:14,186 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-00:38:14,208 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.020771s.
250507-00:38:16,46 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/datasink".
250507-00:38:16,56 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:38:16,57 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000745s.
250507-00:38:16,246 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/parcels".
250507-00:38:16,249 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-00:38:16,271 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.020703s.
250507-00:38:16,655 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 18.63407s.
250507-00:38:18,40 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ArtifactMask".
250507-00:38:18,40 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ArtifactMask".
250507-00:38:18,44 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250507-00:38:18,45 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250507-00:38:19,297 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 9.272933s.
250507-00:38:20,32 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ArtifactMask".
250507-00:38:20,36 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250507-00:38:23,795 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 5.749893s.
250507-00:38:23,910 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 5.864261s.
250507-00:38:24,35 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/BigPlot".
250507-00:38:24,41 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-00:38:25,514 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 5.476524s.
250507-00:38:26,42 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/BigPlot".
250507-00:38:26,42 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/BigPlot".
250507-00:38:26,48 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-00:38:26,48 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-00:38:26,362 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.319731s.
250507-00:38:28,43 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/BigPlot".
250507-00:38:28,48 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-00:38:28,74 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.025455s.
250507-00:38:28,212 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.163555s.
250507-00:38:30,37 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/BigPlot".
250507-00:38:30,38 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/BigPlot".
250507-00:38:30,43 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-00:38:30,43 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-00:38:30,272 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.223099s.
250507-00:38:31,911 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 1.866822s.
250507-00:38:32,5 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 1.960687s.
250507-00:38:32,40 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/provenance".
250507-00:38:32,45 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:38:32,223 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.177422s.
250507-00:38:32,364 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ComputeQI2".
250507-00:38:32,367 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250507-00:38:34,42 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotAirmask".
250507-00:38:34,42 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotArtmask".
250507-00:38:34,45 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250507-00:38:34,46 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250507-00:38:42,170 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 8.123124s.
250507-00:38:43,726 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 9.679486s.
250507-00:38:44,51 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/provenance".
250507-00:38:44,61 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:38:44,228 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.166671s.
250507-00:38:44,376 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ComputeQI2".
250507-00:38:44,377 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotAirmask".
250507-00:38:44,379 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250507-00:38:44,382 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250507-00:38:48,411 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 16.043424s.
250507-00:38:50,63 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotArtmask".
250507-00:38:50,67 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250507-00:38:55,114 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 10.73067s.
250507-00:38:56,72 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/provenance".
250507-00:38:56,75 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:38:56,245 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.168357s.
250507-00:38:56,411 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ComputeQI2".
250507-00:38:56,414 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250507-00:38:59,751 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 9.684028s.
250507-00:38:59,805 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 15.424431s.
250507-00:39:00,63 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotAirmask".
250507-00:39:00,63 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotArtmask".
250507-00:39:00,66 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250507-00:39:00,66 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250507-00:39:07,838 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 7.7707370000000004s.
250507-00:39:08,76 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/MergePlots".
250507-00:39:08,82 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:39:08,84 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000276s.
250507-00:39:09,267 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 9.199619s.
250507-00:39:10,68 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/MergePlots".
250507-00:39:10,68 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/MergePlots".
250507-00:39:10,74 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:39:10,74 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:39:10,75 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000197s.
250507-00:39:10,75 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.00026s.
250507-00:39:11,721 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 15.305966s.
250507-00:39:12,72 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/MergePlots".
250507-00:39:12,73 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/MergePlots".
250507-00:39:12,73 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/MergePlots".
250507-00:39:12,78 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:39:12,79 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000194s.
250507-00:39:12,80 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:39:12,80 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:39:12,81 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000439s.
250507-00:39:12,82 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000368s.
250507-00:39:14,82 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport".
250507-00:39:14,88 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport".
250507-00:39:14,89 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport".
250507-00:39:14,91 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:39:14,92 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:39:14,92 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:39:14,95 cli WARNING:
Building bold report: no exclude index was found
250507-00:39:14,95 cli WARNING:
Building bold report: no exclude index was found
250507-00:39:14,95 cli WARNING:
Building bold report: no exclude index was found
250507-00:39:14,171 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-1_bold.html
250507-00:39:14,171 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-1_bold.html
250507-00:39:14,172 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.078924s.
250507-00:39:14,172 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.079476s.
250507-00:39:14,173 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-2_bold.html
250507-00:39:14,173 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.081178s.
250507-00:39:16,78 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport".
250507-00:39:16,78 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport".
250507-00:39:16,78 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport".
250507-00:39:16,81 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:39:16,82 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:39:16,82 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:39:16,82 cli WARNING:
Building bold report: no exclude index was found
250507-00:39:16,82 cli WARNING:
Building bold report: no exclude index was found
250507-00:39:16,83 cli WARNING:
Building bold report: no exclude index was found
250507-00:39:16,130 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-1_bold.html
250507-00:39:16,130 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-2_bold.html
250507-00:39:16,131 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.04812s.
250507-00:39:16,131 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.048478s.
250507-00:39:16,134 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-2_bold.html
250507-00:39:16,134 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.05126s.
250507-00:39:18,87 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dsplots".
250507-00:39:18,90 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:39:18,91 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000477s.
250507-00:39:18,233 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dsplots".
250507-00:39:18,237 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:39:18,238 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000416s.
250507-00:39:18,411 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dsplots".
250507-00:39:18,414 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:39:18,416 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000414s.
250507-00:39:18,594 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dsplots".
250507-00:39:18,598 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:39:18,599 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000441s.
250507-00:39:18,763 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dsplots".
250507-00:39:18,774 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:39:18,775 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000424s.
250507-00:39:18,937 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dsplots".
250507-00:39:18,948 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:39:18,949 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000424s.
250507-00:39:19,116 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-00:39:19,118 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-00:39:19,119 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:19,119 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-00:39:19,121 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:19,122 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:20,885 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 1.765113s.
250507-00:39:21,125 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 2.001812s.
250507-00:39:21,235 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 2.112045s.
250507-00:39:22,113 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-00:39:22,114 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-00:39:22,115 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:22,116 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:22,117 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-00:39:22,119 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250507-00:39:22,119 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250507-00:39:22,120 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-00:39:22,121 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250507-00:39:22,121 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250507-00:39:22,122 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-00:39:22,123 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250507-00:39:22,123 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250507-00:39:23,968 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 1.851235s.
250507-00:39:24,12 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 1.89449s.
250507-00:39:24,84 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-00:39:24,86 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:25,680 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 1.593118s.
250507-00:39:26,86 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-00:39:26,87 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-00:39:26,88 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:26,89 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:26,90 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-00:39:26,91 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250507-00:39:26,92 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250507-00:39:26,93 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-00:39:26,94 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250507-00:39:26,94 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250507-00:39:26,95 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-00:39:26,96 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250507-00:39:26,96 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250507-00:39:27,758 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 1.66719s.
250507-00:39:27,886 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 1.79638s.
250507-00:39:28,89 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-00:39:28,91 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:39:30,18 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 1.9258739999999999s.
250507-00:39:32,94 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-00:39:32,95 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250507-00:39:32,95 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250507-00:39:32,96 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-00:39:32,97 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250507-00:39:32,97 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250507-00:39:32,98 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-00:39:32,99 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250507-00:39:32,99 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250507-00:41:25,388 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 247.403251s.
250507-00:41:26,130 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 254.147538s.
250507-00:41:26,207 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/harmonize".
250507-00:41:26,208 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotSegmentation".
250507-00:41:26,212 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250507-00:41:26,213 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250507-00:41:28,44 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 1.831384s.
250507-00:41:28,230 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/harmonize".
250507-00:41:28,231 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotSegmentation".
250507-00:41:28,231 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/measures".
250507-00:41:28,234 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250507-00:41:28,235 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250507-00:41:28,240 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250507-00:41:30,17 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 1.781854s.
250507-00:41:30,242 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/measures".
250507-00:41:30,252 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250507-00:41:33,524 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 5.288056s.
250507-00:41:34,231 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MergePlots".
250507-00:41:34,238 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:41:34,239 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000247s.
250507-00:41:37,719 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 11.505307s.
250507-00:41:38,247 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MergePlots".
250507-00:41:38,260 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:41:38,262 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.0003s.
250507-00:41:39,913 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 11.671279s.
250507-00:41:40,239 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datasink".
250507-00:41:40,250 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:41:40,252 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001353s.
250507-00:41:41,526 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 11.273095s.
250507-00:41:42,224 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datasink".
250507-00:41:42,232 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:41:42,234 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000768s.
250507-00:41:42,391 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport".
250507-00:41:42,396 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:41:42,605 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport/sub-02_T1w.html
250507-00:41:42,606 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.209163s.
250507-00:41:44,233 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/dsplots".
250507-00:41:44,235 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport".
250507-00:41:44,238 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:41:44,239 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:41:44,240 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000733s.
250507-00:41:44,440 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport/sub-01_T1w.html
250507-00:41:44,441 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.200845s.
250507-00:41:46,223 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/dsplots".
250507-00:41:46,226 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:41:46,227 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000392s.
250507-00:42:00,285 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 250.266828s.
250507-00:42:02,229 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/harmonize".
250507-00:42:02,230 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotSegmentation".
250507-00:42:02,233 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250507-00:42:02,233 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250507-00:42:03,928 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 1.693574s.
250507-00:42:04,235 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/measures".
250507-00:42:04,244 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250507-00:42:13,503 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 11.268949s.
250507-00:42:14,257 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MergePlots".
250507-00:42:14,265 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-00:42:14,266 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000229s.
250507-00:42:15,768 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 11.522662s.
250507-00:42:16,242 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datasink".
250507-00:42:16,251 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-00:42:16,259 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.007368s.
250507-00:42:18,244 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport".
250507-00:42:18,249 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-00:42:18,419 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport/sub-03_T1w.html
250507-00:42:18,420 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.169701s.
250507-00:42:20,248 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/dsplots".
250507-00:42:20,251 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-00:42:20,252 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000396s.
250507-00:42:22,184 cli IMPORTANT:
Participant level finished successfully.
250507-00:42:22,184 cli INFO:
Generating BIDS derivatives metadata.
250507-00:42:22,185 cli INFO:
MRIQC completed.
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
Group-level Analysis#
%%bash
mriqc ds000102 \
MRIQC \
group \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10000 \
--verbose-reports \
-v
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
MRIQC Visual Reports#
MRIQC automatically generates individual and group-level reports to support the quality assessment of MRI data.
Individual reports include mosaic views of anatomical or functional images along various cutting planes, along with overlays like segmentation contours or motion estimates. These visuals help quickly screen for artifacts or other issues. They are especially useful for reviewing images that may have been flagged as low-quality by the automated classifier.
Group reports compile quality metrics across all subjects and display interactive scatter plots for each image quality metric (IQM). These plots make it easy to spot outliers—clicking on any point in the scatter plot refers to the corresponding individual report for that subject.
These embedded reports offer an intuitive way to explore quality metrics and support decisions about excluding or further examining specific runs or subjects.
Anatomical Report#
%%capture
! pip install beautifulsoup4
from bs4 import BeautifulSoup
from IPython.display import HTML, display
with open('./MRIQC/sub-01_T1w.html') as f:
soup = BeautifulSoup(f, 'html.parser')
# Remove scripts and interactive elements
for tag in soup(['script', 'style', 'button', 'nav']):
tag.decompose()
display(HTML(str(soup)))
MRIQC: individual T1w report
Summary
- BIDS filename: sub-01_T1w.
- Date and time: 2025-05-07, 00:41.
- MRIQC version: 22.0.6.
- Workflow details:
- Detected a zero-filled frame, has the original image been rotated?
Visual reports
Zoomed-in (brain mask)
Background noise
Approximate spatial normalization
Brain mask
Brain tissue segmentation
Artifacts in background
Head outline
"Hat" mask
Distribution of the noise in the background
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
#
To restore the interactive view of the report within the notebook, this is another option to display it:
from IPython.display import IFrame
IFrame(src='./MRIQC/sub-01_T1w.html', width='100%', height='800px')
Functional Report#
with open('./MRIQC/sub-02_task-flanker_run-1_bold.html') as f:
soup = BeautifulSoup(f, 'html.parser')
for tag in soup(['script', 'style', 'button', 'nav']):
tag.decompose()
display(HTML(str(soup)))
MRIQC: individual bold report
Summary
- BIDS filename: sub-02_task-flanker_run-1_bold.
- Date and time: 2025-05-07, 00:39.
- MRIQC version: 22.0.6.
- Workflow details:
- Framewise Displacement was computed using
3dvolreg(AFNI) - Framewise Displacement threshold was defined at 0.200000 mm
- Framewise Displacement was computed using
Visual reports
BOLD average
Standard deviation map
FMRI summary plot
Zoomed-in BOLD average
Background noise
Calculated brain mask
Approximate spatial normalization
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
Or:
IFrame(src='./MRIQC/sub-02_task-flanker_run-1_bold.html', width='100%', height='800px')
Group functional report#
with open('./MRIQC/group_bold.html', 'r') as f:
html = f.read()
display(HTML(html))
MRIQC: group bold report
Summary
- Date and time: 2025-05-07, 00:42.
- MRIQC version: 22.0.6.